Early transcriptomic response to Fe supply in Fe-deficient tomato plants is strongly influenced by the nature of the chelating agent
Identifieur interne : 000242 ( Main/Exploration ); précédent : 000241; suivant : 000243Early transcriptomic response to Fe supply in Fe-deficient tomato plants is strongly influenced by the nature of the chelating agent
Auteurs : Anita Zamboni [Italie] ; Laura Zanin [Italie] ; Nicola Tomasi [Italie] ; Linda Avesani [Italie] ; Roberto Pinton [Italie] ; Zeno Varanini [Italie] ; Stefano Cesco [Italie]Source :
- BMC Genomics [ 1471-2164 ] ; 2016.
Abstract
It is well known that in the rhizosphere soluble Fe sources available for plants are mainly represented by a mixture of complexes between the micronutrient and organic ligands such as carboxylates and phytosiderophores (PS) released by roots, as well as fractions of humified organic matter. The use by roots of these three natural Fe sources (Fe-citrate, Fe-PS and Fe complexed to water-extractable humic substances, Fe-WEHS) have been already studied at physiological level but the knowledge about the transcriptomic aspects is still lacking.
The 59Fe concentration recorded after 24 h in tissues of tomato Fe-deficient plants supplied with 59Fe complexed to WEHS reached values about 2 times higher than those measured in response to the supply with Fe-citrate and Fe-PS. However, after 1 h no differences among the three Fe-chelates were observed considering the 59Fe concentration and the root Fe(III) reduction activity. A large-scale transcriptional analysis of root tissue after 1 h of Fe supply showed that Fe-WEHS modulated only two transcripts leaving the transcriptome substantially identical to Fe-deficient plants. On the other hand, Fe-citrate and Fe-PS affected 728 and 408 transcripts, respectively, having 289 a similar transcriptional behaviour in response to both Fe sources.
The root transcriptional response to the Fe supply depends on the nature of chelating agents (WEHS, citrate and PS). The supply of Fe-citrate and Fe-PS showed not only a fast back regulation of molecular mechanisms modulated by Fe deficiency but also specific responses due to the uptake of the chelating molecule. Plants fed with Fe-WEHS did not show relevant changes in the root transcriptome with respect to the Fe-deficient plants, indicating that roots did not sense the restored cellular Fe accumulation.
The online version of this article (doi:10.1186/s12864-015-2331-5) contains supplementary material, which is available to authorized users.
Url:
DOI: 10.1186/s12864-015-2331-5
PubMed: 26742479
PubMed Central: 4705743
Affiliations:
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Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Agriculture and Environmental Sciences, University of Udine, via delle Scienze 208, 33100 Udine</wicri:regionArea><wicri:noRegion>33100 Udine</wicri:noRegion></affiliation></author><author><name sortKey="Tomasi, Nicola" sort="Tomasi, Nicola" uniqKey="Tomasi N" first="Nicola" last="Tomasi">Nicola Tomasi</name><affiliation wicri:level="1"><nlm:aff id="Aff2">Department of Agriculture and Environmental Sciences, University of Udine, via delle Scienze 208, 33100 Udine, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Agriculture and Environmental Sciences, University of Udine, via delle Scienze 208, 33100 Udine</wicri:regionArea><wicri:noRegion>33100 Udine</wicri:noRegion></affiliation></author><author><name sortKey="Avesani, Linda" sort="Avesani, Linda" uniqKey="Avesani L" first="Linda" last="Avesani">Linda Avesani</name><affiliation wicri:level="1"><nlm:aff id="Aff1">Department of Biotechnology, University of Verona, via delle Grazie 15, 37134 Verona, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Biotechnology, University of Verona, via delle Grazie 15, 37134 Verona</wicri:regionArea><wicri:noRegion>37134 Verona</wicri:noRegion></affiliation></author><author><name sortKey="Pinton, Roberto" sort="Pinton, Roberto" uniqKey="Pinton R" first="Roberto" last="Pinton">Roberto Pinton</name><affiliation wicri:level="1"><nlm:aff id="Aff2">Department of Agriculture and Environmental Sciences, University of Udine, via delle Scienze 208, 33100 Udine, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Agriculture and Environmental Sciences, University of Udine, via delle Scienze 208, 33100 Udine</wicri:regionArea><wicri:noRegion>33100 Udine</wicri:noRegion></affiliation></author><author><name sortKey="Varanini, Zeno" sort="Varanini, Zeno" uniqKey="Varanini Z" first="Zeno" last="Varanini">Zeno Varanini</name><affiliation wicri:level="1"><nlm:aff id="Aff1">Department of Biotechnology, University of Verona, via delle Grazie 15, 37134 Verona, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Biotechnology, University of Verona, via delle Grazie 15, 37134 Verona</wicri:regionArea><wicri:noRegion>37134 Verona</wicri:noRegion></affiliation></author><author><name sortKey="Cesco, Stefano" sort="Cesco, Stefano" uniqKey="Cesco S" first="Stefano" last="Cesco">Stefano Cesco</name><affiliation wicri:level="1"><nlm:aff id="Aff3">Faculty of Science and Technology, Free University of Bolzano, piazza Università 5, 39100 Bolzano, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Faculty of Science and Technology, Free University of Bolzano, piazza Università 5, 39100 Bolzano</wicri:regionArea><wicri:noRegion>39100 Bolzano</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno 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sortKey="Zamboni, Anita" sort="Zamboni, Anita" uniqKey="Zamboni A" first="Anita" last="Zamboni">Anita Zamboni</name><affiliation wicri:level="1"><nlm:aff id="Aff1">Department of Biotechnology, University of Verona, via delle Grazie 15, 37134 Verona, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Biotechnology, University of Verona, via delle Grazie 15, 37134 Verona</wicri:regionArea><wicri:noRegion>37134 Verona</wicri:noRegion></affiliation></author><author><name sortKey="Zanin, Laura" sort="Zanin, Laura" uniqKey="Zanin L" first="Laura" last="Zanin">Laura Zanin</name><affiliation wicri:level="1"><nlm:aff id="Aff2">Department of Agriculture and Environmental Sciences, University of Udine, via delle Scienze 208, 33100 Udine, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Agriculture and Environmental Sciences, University of Udine, via delle Scienze 208, 33100 Udine</wicri:regionArea><wicri:noRegion>33100 Udine</wicri:noRegion></affiliation></author><author><name sortKey="Tomasi, Nicola" sort="Tomasi, Nicola" uniqKey="Tomasi N" first="Nicola" last="Tomasi">Nicola Tomasi</name><affiliation wicri:level="1"><nlm:aff id="Aff2">Department of Agriculture and Environmental Sciences, University of Udine, via delle Scienze 208, 33100 Udine, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Agriculture and Environmental Sciences, University of Udine, via delle Scienze 208, 33100 Udine</wicri:regionArea><wicri:noRegion>33100 Udine</wicri:noRegion></affiliation></author><author><name sortKey="Avesani, Linda" sort="Avesani, Linda" uniqKey="Avesani L" first="Linda" last="Avesani">Linda Avesani</name><affiliation wicri:level="1"><nlm:aff id="Aff1">Department of Biotechnology, University of Verona, via delle Grazie 15, 37134 Verona, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Biotechnology, University of Verona, via delle Grazie 15, 37134 Verona</wicri:regionArea><wicri:noRegion>37134 Verona</wicri:noRegion></affiliation></author><author><name sortKey="Pinton, Roberto" sort="Pinton, Roberto" uniqKey="Pinton R" first="Roberto" last="Pinton">Roberto Pinton</name><affiliation wicri:level="1"><nlm:aff id="Aff2">Department of Agriculture and Environmental Sciences, University of Udine, via delle Scienze 208, 33100 Udine, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Agriculture and Environmental Sciences, University of Udine, via delle Scienze 208, 33100 Udine</wicri:regionArea><wicri:noRegion>33100 Udine</wicri:noRegion></affiliation></author><author><name sortKey="Varanini, Zeno" sort="Varanini, Zeno" uniqKey="Varanini Z" first="Zeno" last="Varanini">Zeno Varanini</name><affiliation wicri:level="1"><nlm:aff id="Aff1">Department of Biotechnology, University of Verona, via delle Grazie 15, 37134 Verona, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Biotechnology, University of Verona, via delle Grazie 15, 37134 Verona</wicri:regionArea><wicri:noRegion>37134 Verona</wicri:noRegion></affiliation></author><author><name sortKey="Cesco, Stefano" sort="Cesco, Stefano" uniqKey="Cesco S" first="Stefano" last="Cesco">Stefano Cesco</name><affiliation wicri:level="1"><nlm:aff id="Aff3">Faculty of Science and Technology, Free University of Bolzano, piazza Università 5, 39100 Bolzano, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Faculty of Science and Technology, Free University of Bolzano, piazza Università 5, 39100 Bolzano</wicri:regionArea><wicri:noRegion>39100 Bolzano</wicri:noRegion></affiliation></author></analytic><series><title level="j">BMC Genomics</title><idno type="eISSN">1471-2164</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Background</title><p>It is well known that in the rhizosphere soluble Fe sources available for plants are mainly represented by a mixture of complexes between the micronutrient and organic ligands such as carboxylates and phytosiderophores (PS) released by roots, as well as fractions of humified organic matter. The use by roots of these three natural Fe sources (Fe-citrate, Fe-PS and Fe complexed to water-extractable humic substances, Fe-WEHS) have been already studied at physiological level but the knowledge about the transcriptomic aspects is still lacking.</p></sec><sec><title>Results</title><p>The <sup>59</sup>Fe concentration recorded after 24 h in tissues of tomato Fe-deficient plants supplied with <sup>59</sup>Fe complexed to WEHS reached values about 2 times higher than those measured in response to the supply with Fe-citrate and Fe-PS. However, after 1 h no differences among the three Fe-chelates were observed considering the <sup>59</sup>Fe concentration and the root Fe(III) reduction activity. A large-scale transcriptional analysis of root tissue after 1 h of Fe supply showed that Fe-WEHS modulated only two transcripts leaving the transcriptome substantially identical to Fe-deficient plants. On the other hand, Fe-citrate and Fe-PS affected 728 and 408 transcripts, respectively, having 289 a similar transcriptional behaviour in response to both Fe sources.</p></sec><sec><title>Conclusions</title><p>The root transcriptional response to the Fe supply depends on the nature of chelating agents (WEHS, citrate and PS). The supply of Fe-citrate and Fe-PS showed not only a fast back regulation of molecular mechanisms modulated by Fe deficiency but also specific responses due to the uptake of the chelating molecule. Plants fed with Fe-WEHS did not show relevant changes in the root transcriptome with respect to the Fe-deficient plants, indicating that roots did not sense the restored cellular Fe accumulation.</p></sec><sec><title>Electronic supplementary material</title><p>The online version of this article (doi:10.1186/s12864-015-2331-5) contains supplementary material, which is available to authorized users.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Kobayashi, T" uniqKey="Kobayashi T">T Kobayashi</name></author><author><name sortKey="Nishizawa" uniqKey="Nishizawa">Nishizawa</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mimmo, T" uniqKey="Mimmo T">T Mimmo</name></author><author><name sortKey="Del Buono, D" uniqKey="Del Buono D">D Del Buono</name></author><author><name sortKey="Terzano, R" uniqKey="Terzano R">R Terzano</name></author><author><name sortKey="Tomasi, N" uniqKey="Tomasi N">N 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W">W Miller</name></author><author><name sortKey="Lipman, Dj" uniqKey="Lipman D">DJ Lipman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ritz, C" uniqKey="Ritz C">C Ritz</name></author><author><name sortKey="Spiess, An" uniqKey="Spiess A">AN Spiess</name></author></analytic></biblStruct><biblStruct></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Italie</li></country></list><tree><country name="Italie"><noRegion><name sortKey="Zamboni, Anita" sort="Zamboni, Anita" uniqKey="Zamboni A" first="Anita" last="Zamboni">Anita Zamboni</name></noRegion><name sortKey="Avesani, Linda" sort="Avesani, Linda" uniqKey="Avesani L" first="Linda" last="Avesani">Linda Avesani</name><name sortKey="Cesco, Stefano" sort="Cesco, Stefano" uniqKey="Cesco S" first="Stefano" last="Cesco">Stefano Cesco</name><name sortKey="Pinton, Roberto" sort="Pinton, Roberto" uniqKey="Pinton R" first="Roberto" last="Pinton">Roberto Pinton</name><name sortKey="Tomasi, Nicola" sort="Tomasi, Nicola" uniqKey="Tomasi N" first="Nicola" last="Tomasi">Nicola Tomasi</name><name sortKey="Varanini, Zeno" sort="Varanini, Zeno" uniqKey="Varanini Z" first="Zeno" last="Varanini">Zeno Varanini</name><name sortKey="Zanin, Laura" sort="Zanin, Laura" uniqKey="Zanin L" first="Laura" last="Zanin">Laura Zanin</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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